1: Building a fully-glycosylated full-length S protein in a viral membrane (6VSB, 6VXX).3: Changing Protonation State with PDB2PQR and reading AMBER FF residue names (6IYC).2: Preparation of protein/DNA/RNA complex for Amber FF (6O0Z).1: Preparation of protein/N-glycan/ligand/membrane complex for Amber FF (5O8F).4: Solution system of a heparan sulfate molecule (1AXM).3: Membrane system of a cholera toxin B and ganglioside GM1 complex (3CHB).2: Modeling N-glycans on a Fc heterodimer of IgG (5TPS).1: Solution System of HIV Envelope Protein (5FYL).1: General Ligand Reading Strategy (186L, 2OI0).5: Oligomerization and Spin Labeling (2OMF).3: Renaming and Missing Residues (5U4J, 5JY6).1: Introduction to PDB Reader (2HAC, 1KDX).
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